https://seagrassmicrobiome.org/2020/03/25/preprint-available-all-small-things-considered-the-diversity-of-fungi-bacteria-and-oomycota-isolated-from-the-seagrass-zostera-marina/2020-03-25T16:04:57+00:00monthlyhttps://seagrassmicrobiome.org/2020/03/25/published-in-frontiers-characterization-of-the-mycobiome-of-the-seagrass-zostera-marina-reveals-putative-associations-with-marine-chytrids/2022-04-29T13:24:17+00:00monthlyhttps://seagrassmicrobiome.org/2019/11/25/slides-for-talk-at-scripps-inst-for-oceanography-marine-host-microbiome-interactions-challenges-and-opportunities/2019-11-25T00:10:14+00:00monthlyhttps://seagrassmicrobiome.org/zostera-marina-microbiome-resources/2019-11-19T16:05:12+00:00weekly0.6https://seagrassmicrobiome.org/2019/08/14/preprint-available-characterization-of-the-mycobiome-of-the-seagrass-zostera-marina-reveals-putative-associations-with-marine-chytrids/2019-08-14T21:34:31+00:00monthlyhttps://seagrassmicrobiome.org/people/laura-vann/https://seagrassmicrobiome.org/wp-content/uploads/2015/06/541652_10205878524335858_1479916507591654528_n.jpg541652_10205878524335858_1479916507591654528_n2018-07-16T22:41:23+00:00weekly0.6https://seagrassmicrobiome.org/people/marcus-cohen/https://seagrassmicrobiome.org/wp-content/uploads/2018/07/20180427_170757.jpg20180427_1707572018-07-16T22:38:41+00:00weekly0.6https://seagrassmicrobiome.org/people/kate-jones/2018-07-16T22:27:35+00:00weekly0.6https://seagrassmicrobiome.org/people/tess-mcdaniel/2018-07-16T22:18:34+00:00weekly0.6https://seagrassmicrobiome.org/2018/05/11/marine-fungi-workshop/https://seagrassmicrobiome.org/wp-content/uploads/2018/05/20180507_130420.jpg20180507_130420https://seagrassmicrobiome.org/wp-content/uploads/2018/05/20180507_154134.jpg20180507_1541342018-05-11T00:46:32+00:00monthlyhttps://seagrassmicrobiome.org/2018/03/31/investigating-the-seagrass-microbiome/2018-03-31T04:03:02+00:00monthlyhttps://seagrassmicrobiome.org/2018/01/27/slides-for-recent-talk-on-our-seagrass-microbiome-project/2018-01-28T00:26:33+00:00monthlyhttps://seagrassmicrobiome.org/people/neil-brahmbhatt/2018-01-20T00:28:58+00:00weekly0.6https://seagrassmicrobiome.org/people/katie-somers/2018-01-20T00:28:34+00:00weekly0.6https://seagrassmicrobiome.org/past-projects/2017-08-16T20:07:26+00:00weekly0.6https://seagrassmicrobiome.org/chesapeake-bay-sav-microbiomes/2017-08-16T20:02:17+00:00weekly0.6https://seagrassmicrobiome.org/projects/intra-plant-biogeography/https://seagrassmicrobiome.org/wp-content/uploads/2014/06/diversity_z1_cropped.pngdiversity_z1_croppedhttps://seagrassmicrobiome.org/wp-content/uploads/2014/06/diversity_z1.pngdiversity_z1https://seagrassmicrobiome.org/wp-content/uploads/2014/06/pcoa_communities_z1.pngpcoa_communities_z12017-08-16T19:59:20+00:00weekly0.6https://seagrassmicrobiome.org/people/cassie-ettinger/https://seagrassmicrobiome.org/wp-content/uploads/2014/06/img_83199-e1402353708323.jpgCassie Photo2017-08-16T19:58:00+00:00weekly0.6https://seagrassmicrobiome.org/seagrass-associated-fungi/https://seagrassmicrobiome.org/wp-content/uploads/2017/08/img_02631.jpgIMG_0263https://seagrassmicrobiome.org/wp-content/uploads/2017/08/img_0263.jpgIMG_02632017-08-16T19:43:10+00:00weekly0.6https://seagrassmicrobiome.org/projects/ammonification-experiment/2017-08-16T18:53:00+00:00weekly0.6https://seagrassmicrobiome.org/2017/08/16/now-out-in-peerj-microbiome-succession-during-ammonification-in-eelgrass-bed-sediments/2017-08-16T18:51:00+00:00monthlyhttps://seagrassmicrobiome.org/2017/04/29/preprint-available-microbiome-succession-during-ammonification-in-eelgrass-bed-sediments/2017-04-29T02:49:45+00:00monthlyhttps://seagrassmicrobiome.org/projects/edge-effects/https://seagrassmicrobiome.org/wp-content/uploads/2014/06/seagrassedgev2.pngEdge Effects diagram2017-04-27T15:19:00+00:00weekly0.6https://seagrassmicrobiome.org/2017/04/27/now-out-in-peerj-microbial-communities-in-sediment-from-zostera-marina-patches-but-not-the-z-marina-leaf-or-root-microbiomes-vary-in-relation-to-distance-from-patch-edge/2017-04-27T15:15:00+00:00monthlyhttps://seagrassmicrobiome.org/projects/zen2-global-biogeography-of-zostera-marina-microbes/2017-04-17T17:36:08+00:00weekly0.6https://seagrassmicrobiome.org/2017/04/17/now-out-in-aem-global-scale-structure-of-the-eelgrass-microbiome/2017-04-17T17:19:06+00:00monthlyhttps://seagrassmicrobiome.org/people/taylor-tucker/2017-02-06T21:11:21+00:00weekly0.6https://seagrassmicrobiome.org/people/david-coil/https://seagrassmicrobiome.org/wp-content/uploads/2017/01/davidicon.jpgdavidicon2017-01-25T21:45:17+00:00weekly0.6https://seagrassmicrobiome.org/2017/01/25/preprint-available-global-scale-structure-of-the-eelgrass-microbiome/2017-01-25T19:01:14+00:00monthlyhttps://seagrassmicrobiome.org/people/melissa-kardish/https://seagrassmicrobiome.org/wp-content/uploads/2017/01/img_2912.jpgimg_29122017-01-25T18:42:41+00:00weekly0.6https://seagrassmicrobiome.org/projects/bodega-bay-common-garden-experiments/2017-01-25T18:21:02+00:00weekly0.6https://seagrassmicrobiome.org/people/ashkaan-fahimipour/https://seagrassmicrobiome.org/wp-content/uploads/2017/01/ashkaan-1.jpgashkaan-12017-01-25T17:59:33+00:00weekly0.6https://seagrassmicrobiome.org/people/jenna-lang/https://seagrassmicrobiome.org/wp-content/uploads/2014/06/2ea23470288a3ef78f7c7aa087776693.jpeg2ea23470288a3ef78f7c7aa0877766932017-01-25T17:53:05+00:00weekly0.6https://seagrassmicrobiome.org/people/hannah-holland-moritz/https://seagrassmicrobiome.org/wp-content/uploads/2014/06/cb6vjv5.jpeg_Cb6vjV52017-01-25T17:52:05+00:00weekly0.6https://seagrassmicrobiome.org/people/alana-firl/https://seagrassmicrobiome.org/wp-content/uploads/2015/06/afirl.jpegafirl2017-01-25T17:51:00+00:00weekly0.6https://seagrassmicrobiome.org/people/alex-alexiev/https://seagrassmicrobiome.org/wp-content/uploads/2015/06/522853_3614969096636_1346079310_3444176_746049374_n.jpeg522853_3614969096636_1346079310_3444176_746049374_n2017-01-25T17:48:09+00:00weekly0.6https://seagrassmicrobiome.org/2016/11/01/bacterial-isolates-from-seagrass-samples-a-new-approach/https://seagrassmicrobiome.org/wp-content/uploads/2016/11/dsc_0721.jpgdsc_07212020-08-14T00:53:24+00:00monthlyhttps://seagrassmicrobiome.org/2016/10/07/seagrass-microbiome-sampling/https://seagrassmicrobiome.org/wp-content/uploads/2016/10/4309249067380048956-account_id11.jpg4309249067380048956-account_id1Samples for one individual from Kotzebue, AK. From left to right: root, sediment, and leaf. https://seagrassmicrobiome.org/wp-content/uploads/2016/10/4309249067380048956-account_id1.jpg4309249067380048956-account_id1https://seagrassmicrobiome.org/wp-content/uploads/2016/10/twitpic2.pngtwitpic2Vann and Firl putting together kits in lab, photo from Katie Dahlhausen (@PhDKD)https://seagrassmicrobiome.org/wp-content/uploads/2016/10/20160701_134713.jpg20160701_134713https://seagrassmicrobiome.org/wp-content/uploads/2016/10/20160701_134732.jpg20160701_134732Close up of kithttps://seagrassmicrobiome.org/wp-content/uploads/2016/10/20160719_180539.jpg20160719_180539Completed kits, ready to go! https://seagrassmicrobiome.org/wp-content/uploads/2016/10/20160809_165143.jpg20160809_165143Tubes all ready to go! https://seagrassmicrobiome.org/wp-content/uploads/2016/10/microbiome.pngmicrobiome2016-10-07T19:58:58+00:00monthlyhttps://seagrassmicrobiome.org/2016/09/28/marine-algal-and-plant-microbiomes-workshop-soliciting-comments/2016-09-28T23:25:08+00:00monthlyhttps://seagrassmicrobiome.org/people/karley-lujan/2016-05-19T03:55:06+00:00weekly0.6https://seagrassmicrobiome.org/2016/05/19/culturing-bacterial-isolates-from-the-seagrass-microbiome/https://seagrassmicrobiome.org/wp-content/uploads/2016/05/fullsizerender-1.jpgFullSizeRender (1)https://seagrassmicrobiome.org/wp-content/uploads/2016/05/cvk_y3zveaa229b-large-1.jpgCVK_y3zVEAA229b.jpg large (1)2016-05-19T00:02:20+00:00monthlyhttps://seagrassmicrobiome.org/2016/04/28/genome-of-z-marina-sequenced/2016-04-28T21:37:31+00:00monthlyhttps://seagrassmicrobiome.org/2016/04/14/adventures-in-sem/https://seagrassmicrobiome.org/wp-content/uploads/2016/04/root4.jpgroot4Root tip with strange filamentshttps://seagrassmicrobiome.org/wp-content/uploads/2016/04/rhizome1.jpgrhizome1Diatoms on rhizome surfacehttps://seagrassmicrobiome.org/wp-content/uploads/2016/04/leafedge01.jpgleafedge01Close-up of diatoms on live leafhttps://seagrassmicrobiome.org/wp-content/uploads/2016/04/leaf02.jpgleaf02Diatom distribution on live leafhttps://seagrassmicrobiome.org/wp-content/uploads/2016/04/dead01.jpgdead01Diatom distribution on decaying leafhttps://seagrassmicrobiome.org/wp-content/uploads/2016/04/20160414_1019441.jpg20160414_101944https://seagrassmicrobiome.org/wp-content/uploads/2016/04/20160414_101944.jpg20160414_101944Samples on mount ready for SEMhttps://seagrassmicrobiome.org/wp-content/uploads/2016/04/20160414_101454.jpg20160414_101454Hitachi Tabletop SEMhttps://seagrassmicrobiome.org/wp-content/uploads/2016/04/20160414_101500.jpg20160414_101500SEM demo room @ UCDavis. Hitachi TableTop is the large rectangular machine on the left.2019-02-18T01:56:17+00:00monthlyhttps://seagrassmicrobiome.org/2015/10/02/ca-sampling-for-project-phylogeny/https://seagrassmicrobiome.org/wp-content/uploads/2015/10/20150915_162739.jpg20150915_162739Map of Folsom Lake, with parking instructions drawn on by park official. X marks location of new parking lot, which is still at 15 minute walk to the shoreline. https://seagrassmicrobiome.org/wp-content/uploads/2015/10/crap-001.jpgcrap.001https://seagrassmicrobiome.org/wp-content/uploads/2015/10/img_0384_cr7.jpgIMG_0384_CR7Example leaf from Alisma species, collected at Cosumnes Riverhttps://seagrassmicrobiome.org/wp-content/uploads/2015/10/img_0385_cr7.jpgIMG_0385_CR7Example root mass from Alisma species, collected at Cosumnes Riverhttps://seagrassmicrobiome.org/wp-content/uploads/2015/10/photo-4.jpgphoto-4From https://phylogenomics.wordpress.com/people/post-docs/jenna-lang/seagrass/photo-4/: This is a phylogeny of the seagrasses and their aquatic relatives. This tree was built using parsimony and ~1200bp alignment of the rbcL gene. From Les and Cleland, 1997. 2015-10-02T19:43:19+00:00monthlyhttps://seagrassmicrobiome.org/2015/10/01/sample-preservation-experiment/https://seagrassmicrobiome.org/wp-content/uploads/2015/10/20150902_072734.jpg20150902_072734https://seagrassmicrobiome.org/wp-content/uploads/2015/10/zymo.pngZymoWeighted unifrac PCoA showing time point variation within Zymohttps://seagrassmicrobiome.org/wp-content/uploads/2015/10/ice.pngIceWeighted unifrac PCoA showing time point variation within dry icehttps://seagrassmicrobiome.org/wp-content/uploads/2015/10/otu1.pngOTUTaxonomy summary plot: Order levelhttps://seagrassmicrobiome.org/wp-content/uploads/2015/10/otu.pngOTUhttps://seagrassmicrobiome.org/wp-content/uploads/2015/10/pca.pngPCAhttps://seagrassmicrobiome.org/wp-content/uploads/2015/09/20150611_133052.jpg20150611_1330522015-10-01T20:55:40+00:00monthlyhttps://seagrassmicrobiome.org/sample-collection-and-preservation/https://seagrassmicrobiome.org/wp-content/uploads/2015/06/zostera_marina.pngzostera_marina2015-10-01T20:50:54+00:00weekly0.6https://seagrassmicrobiome.org/2015/09/28/mbl-microbial-diversity-summer-course/2015-09-28T20:53:21+00:00monthlyhttps://seagrassmicrobiome.org/2015/06/30/visualizing-microbiome-data-choropleth-style/https://seagrassmicrobiome.org/wp-content/uploads/2015/06/screenshot-from-2015-06-04-150537_redbox-e1433455936520.pngScreenshot from 2015-06-04 15:05:37_redboxhttps://seagrassmicrobiome.org/wp-content/uploads/2015/06/screenshot-from-2015-05-06-152834.pngNaming objects with sample IDs in Inkscape.https://seagrassmicrobiome.org/wp-content/uploads/2015/06/zosteramarina3.pngzosteramarina3https://seagrassmicrobiome.org/wp-content/uploads/2015/06/screenshot-from-2015-05-06-150021.pngScreenshot from 2015-05-06 15:00:21https://seagrassmicrobiome.org/wp-content/uploads/2015/06/k00390.pngk00390https://seagrassmicrobiome.org/wp-content/uploads/2015/06/zostera-marina-high-resolution.gifZostera marina high resolution2015-06-30T23:24:48+00:00monthlyhttps://seagrassmicrobiome.org/projects/preservation-experiment/https://seagrassmicrobiome.org/wp-content/uploads/2015/06/screen-shot-2015-06-30-at-11-19-27-am1.pngScreen Shot 2015-06-30 at 11.19.27 AMhttps://seagrassmicrobiome.org/wp-content/uploads/2015/06/screen-shot-2015-06-30-at-11-19-27-am.pngScreen Shot 2015-06-30 at 11.19.27 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2-1Photo: Madison Dunitz2018-06-08T07:34:51+00:00weekly0.6https://seagrassmicrobiome.org/2015/06/05/potomac-samples-not-what-we-expected-but-still-some-interesting-connections/https://seagrassmicrobiome.org/wp-content/uploads/2015/06/sampletype.pngsampletypehttps://seagrassmicrobiome.org/wp-content/uploads/2015/06/screen-shot-2015-06-05-at-11-21-11-am.pngScreen Shot 2015-06-05 at 11.21.11 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 Mangroves! Some deal with salt by excreting it from the leaf surface, others have specialized salt excretion nodules at the base of the leaves.https://seagrassmicrobiome.org/wp-content/uploads/2014/04/img_2800.jpgIMG_2800The three species I found in Indian River Lagoon. 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