We are constantly starting, finishing and revisiting projects related to the seagrass microbiome. As projects get wrapped up and papers get published, we will try to post the papers collectively here.
Seagrass Isolates:
Lee RD, Jospin G, Lang JM, Eisen JA, Coil DA. 2015. Draft genome sequence of Pseudoalteromonas tetraodonis strain UCD-SED8 (phylum Gammaproteobacteria). Genome Announc 3(6):e01276-15. doi:10.1128/genomeA.01276-15.
Lee RD, Jospin G, Lang JM, Eisen JA, Coil DA. 2015. Draft genome sequence of Bacillus vietnamensis strain UCD-SED5 (phylum Firmicutes). Genome Announc 3(6):e01376-15. doi:10.1128/genomeA.01376-15.
Lee RD, Jospin G, Lang JM, Eisen JA, Coil DA. 2016. Draft genome sequences of two Vibrio splendidus strains, isolated from seagrass sediment. Genome Announc 4(1):e01769-15. doi:10.1128/genomeA.01769-15.
Alexiev A, Krusor ML, Jospin G, Lang JM, Eisen JA, Coil DA. 2016. Draft genome sequences of two Pseudoalteromonas strains isolated from roots and leaf blades of the seagrass Zostera marina. Genome Announc 4(1):e00010-16. doi:10.1128/genomeA.00010-16.
Alexiev A, Krusor ML, Jospin G, Lang JM, Eisen JA, Coil DA. 2016. Draft genome sequence of Cobetia sp. UCD-24C, isolated from roots and leaves of the seagrass Zostera marina. Genome Announc 4(2):e00116-16. doi:10.1128/genomeA.00116-16.
Lee RD, Jospin G, Lang JM, Eisen JA, Coil DA. 2016. Draft genome sequences of two Pseudoalteromonas porphyrae strains isolated from seagrass sediment. Genome Announc 4(2):e00092-16. doi:10.1128/genomeA.00092-16.
Lujan KM, Eisen JA, Coil DA. 2016. Draft genome sequence of Tenacibaculum soleae UCD-KL19. Genome Announc 4(5):e01120-16. doi:10.1128/genomeA.01120-16.
Lujan KM, Eisen JA, Coil DA. 2017. Draft genome sequences of Pseudomonas moraviensis UCD-KL30, Vibrio ostreicida UCD-KL16, Colwellia sp. strain UCD-KL20, Shewanella sp. strain UCD-KL12, and Shewanella sp. strain UCD-KL21, isolated from seagrass. Genome Announc 5:e00023-17.
ZEN2: Global Biogeography of Zostera marina microbes:
Fahimipour, A.K., Kardish, M.R., Lang, J.M., Green, J.L., Eisen, J.A. and Stachowicz, J.J., 2017. Global-scale structure of the eelgrass microbiome. Applied and environmental microbiology, 83(12):e03391-16.
Edge Effects:
Ettinger, C.L., Voerman, S.E., Lang, J.M., Stachowicz, J.J. and Eisen, J.A., 2017. Microbial communities in sediment from Zostera marina patches, but not the Z. marina leaf or root microbiomes, vary in relation to distance from patch edge. PeerJ, 5:e3246.
Ammonification Project:
Ettinger CL, Williams SL, Abbott JM, Stachowicz JJ, Eisen JA. (2017) Microbiome succession during ammonification in eelgrass bed sediments. PeerJ, 5:e3674
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The Seagrass Microbiome Project 